Haplotype.pm

- NAME
- SYNOPSIS
- DESCRIPTION
- LICENSE
- FEEDBACK
- AUTHOR - Steve Mathias
- DETAILS
- Imported Packages
- Public methods

- printXML

# NAME

Genetics::Haplotype

# SYNOPSIS

      $ht = new Genetics::Haplotype(name => '12pEA1.1',
                                    importID => 268,
                                    dateCreated => $today,
                                    Keywords => [ {name => "Test Data",
                                                   dataType => "Boolean",
                                                   value => 1},
                                                ],
                                    MarkerCollection => {name => "12pEA1", importID => 267},
                                    Alleles => [ {name => 2, type => "code"},
                                                 {name => "C", type => "nucleotide"} ],
                                   ) ;

See the GenPerl Tutorial for more information.

# DESCRIPTION

Haplotype objects represent a specific combination of alleles that are known, or predicted, to be segregating togehter. The alleles in a haplotype may be experimentally determined or predicted statistically.

# LICENSE

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA

# FEEDBACK

Currently, all feedback should be sent directly to the author.

# AUTHOR - Steve Mathias

Email: mathias@genomica.com

Phone: (720) 565-4029

Address: Genomica Corporation 1745 38th Street Boulder, CO 80301

# DETAILS

The rest of the documentation describes each of the object variables and methods. The names of internal variables and methods are preceded with an underscore (_).

# Imported Packages

     Genetics::Object       Superclass
     strict                 Just to be anal
     vars                   Global variables

# Public methods

## printXML

      Function  : Print an XML representation of the object.
      Argument  : A Genetics::StudyVariable object and the XML::Writer object being
                  used to generate the XML.
      Returns   : String
      Scope     : Public Instance Method
      Comments  : Calls Genetics::Object->printGeneralXML to generate XML elements
                  common to all Genetics::Object objects.